PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G075600.4.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family E2F/DP
Protein Properties Length: 337aa    MW: 37215.8 Da    PI: 4.3934
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G075600.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.12.6e-272590171
             E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                        r+++sL+llt+kf++ll+++e+giv+ln++a+ L   dv  ++RRiYDi+NVLe+++liekk kn+i+wkg
  Brast09G075600.4.p 25 RYDNSLGLLTRKFINLLKQAEDGIVDLNSAAEIL---DV--QKRRIYDITNVLEGIGLIEKKIKNRIHWKG 90
                        689*******************************...**..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-282292IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.03E-182588IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013727.7E-352590IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023196.1E-242790IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146601.54E-41100206No hitNo description
SuperFamilySSF1440747.85E-30102206No hitNo description
PfamPF164215.8E-29105204IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MVELHAPLCF AGSPGNPLTP AGSCRYDNSL GLLTRKFINL LKQAEDGIVD LNSAAEILDV  60
QKRRIYDITN VLEGIGLIEK KIKNRIHWKG LNDSGSNSDN TISVLQTEVE NLNLQEEVLD  120
EHISEIHEKI REFTEEESNQ RWLYLTEDDI KGLPCFQNGT LIAIKAPHGT TLEVPDPDEA  180
GDYIKRMYRI VIRSTRGSID LYLVSKSDEK IEEVDVATPP RQADLATPTS VKGFGAIEAG  240
QSSRANDMLP NIQYIRKTPD LNAQDFGGVA ITPEVDTDAD YWLLTDGDDV SITDMWKTAP  300
EVQWDQFLAK EETTPCALKQ QAAVVGKPTV VGPTHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A2e-242092275PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581217.10.0PREDICTED: transcription factor E2FA-like isoform X1
SwissprotQ9FNY01e-99E2FA_ARATH; Transcription factor E2FA
TrEMBLA0A0Q3E4020.0A0A0Q3E402_BRADI; Uncharacterized protein
STRINGSi017108m1e-151(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.12e-93E2F transcription factor 3